Carnation DB

Dca47310.1

Annotation

9-exons
f-1
sp|B9H597_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_861364#GO:0003852;GO:0009098#1F1P0C
AT1G74040.1 | Symbols: IMS1, MAML-3, IPMS2 | 2-isopropylmalate synthase 1 | chr1:27842258-27845566 FORWARD LENGTH=631
Repeat List (scaffold574)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca47310.1	1	378	380	61.84	378	62	6e-137
Target_name	Start	End	Length	Cov(%)
sp\|B9H597_POPTR	33	410	558	67.74

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca47310.1	1	378	380	60.52	378	61	2e-135
Target_name	Start	End	Length	Cov(%)
AT1G74040.1	105	482	631	59.9

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold574	Augus-PASA	mRNA	107563	116927	.	+	.	ID=Dca47310.1;Parent=Dca47310
scaffold574	Augus-PASA	exon	107563	107963	.	+	.	ID=Dca47310.1.exon1;Parent=Dca47310.1
scaffold574	Augus-PASA	exon	108345	108558	.	+	.	ID=Dca47310.1.exon2;Parent=Dca47310.1
scaffold574	Augus-PASA	exon	108658	108738	.	+	.	ID=Dca47310.1.exon3;Parent=Dca47310.1
scaffold574	Augus-PASA	exon	108856	108948	.	+	.	ID=Dca47310.1.exon4;Parent=Dca47310.1
scaffold574	Augus-PASA	exon	111079	111165	.	+	.	ID=Dca47310.1.exon5;Parent=Dca47310.1
scaffold574	Augus-PASA	exon	113178	113272	.	+	.	ID=Dca47310.1.exon6;Parent=Dca47310.1
scaffold574	Augus-PASA	exon	115099	115132	.	+	.	ID=Dca47310.1.exon7;Parent=Dca47310.1
scaffold574	Augus-PASA	exon	116673	116747	.	+	.	ID=Dca47310.1.exon8;Parent=Dca47310.1
scaffold574	Augus-PASA	exon	116865	116927	.	+	.	ID=Dca47310.1.exon9;Parent=Dca47310.1