Carnation DB

Dca474.1

Annotation

12-exons
f-1
sp|B9HNV8_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_1087966#GO:0005634;GO:0000808;GO:0005524;GO:0017111;GO:0008270;GO:0006260#3F1P2C
AT4G12620.1 | Symbols: ORC1B, ATORC1B, UNE13 | origin of replication complex 1B | chr4:7459812-7462253 REVERSE LENGTH=813
Repeat List (scaffold1008)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca474.1	19	845	845	65.56	827	67	0
Target_name	Start	End	Length	Cov(%)
sp\|B9HNV8_POPTR	17	814	814	98.03

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca474.1	156	845	845	57.75	690	71	0
Target_name	Start	End	Length	Cov(%)
AT4G12620.1	129	813	813	84.25

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold1008	Augustus	mRNA	49121	53241	.	+	.	ID=Dca474.1;Parent=Dca474
scaffold1008	Augustus	exon	49121	49956	.	+	.	ID=Dca474.1.exon1;Parent=Dca474.1
scaffold1008	Augustus	exon	50445	50580	.	+	.	ID=Dca474.1.exon2;Parent=Dca474.1
scaffold1008	Augustus	exon	50809	50958	.	+	.	ID=Dca474.1.exon3;Parent=Dca474.1
scaffold1008	Augustus	exon	51037	51192	.	+	.	ID=Dca474.1.exon4;Parent=Dca474.1
scaffold1008	Augustus	exon	51278	51429	.	+	.	ID=Dca474.1.exon5;Parent=Dca474.1
scaffold1008	Augustus	exon	51512	51611	.	+	.	ID=Dca474.1.exon6;Parent=Dca474.1
scaffold1008	Augustus	exon	51705	51827	.	+	.	ID=Dca474.1.exon7;Parent=Dca474.1
scaffold1008	Augustus	exon	51917	52078	.	+	.	ID=Dca474.1.exon8;Parent=Dca474.1
scaffold1008	Augustus	exon	52174	52231	.	+	.	ID=Dca474.1.exon9;Parent=Dca474.1
scaffold1008	Augustus	exon	52338	52854	.	+	.	ID=Dca474.1.exon10;Parent=Dca474.1
scaffold1008	Augustus	exon	52975	53058	.	+	.	ID=Dca474.1.exon11;Parent=Dca474.1
scaffold1008	Augustus	exon	53178	53241	.	+	.	ID=Dca474.1.exon12;Parent=Dca474.1