Carnation DB

Dca47613.1

Annotation

7-exons
f-1
sp|B9ICF1_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_575515#unknown#0F0P0C
Os02t0651000-01 Uncharacterised protein family UPF0406 domain containing protein.
Repeat List (scaffold580)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca47613.1	1	252	297	55.55	252	64	3e-80
Target_name	Start	End	Length	Cov(%)
sp\|B9ICF1_POPTR	1	259	290	89.31

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca47613.1	51	240	297	42.08	190	66	3e-69
Target_name	Start	End	Length	Cov(%)
AT5G51170.1	56	244	285	66.31

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold580	Augustus	mRNA	66846	74562	.	-	.	ID=Dca47613.1;Parent=Dca47613
scaffold580	Augustus	exon	66846	66977	.	-	.	ID=Dca47613.1.exon1;Parent=Dca47613.1
scaffold580	Augustus	exon	69098	69211	.	-	.	ID=Dca47613.1.exon2;Parent=Dca47613.1
scaffold580	Augus-PASA	exon	69308	69373	.	-	.	ID=Dca47613.1.exon3;Parent=Dca47613.1
scaffold580	Augus-PASA	exon	69640	69736	.	-	.	ID=Dca47613.1.exon4;Parent=Dca47613.1
scaffold580	Augus-PASA	exon	69826	70075	.	-	.	ID=Dca47613.1.exon5;Parent=Dca47613.1
scaffold580	Augus-PASA	exon	71717	71809	.	-	.	ID=Dca47613.1.exon6;Parent=Dca47613.1
scaffold580	Augus-PASA	exon	74421	74562	.	-	.	ID=Dca47613.1.exon7;Parent=Dca47613.1