Dca47792.1
Annotation
- 3-exons
- f-1
- sp|D7MMA1_ARALL#Putative uncharacterized protein#Arabidopsis lyrata subsp lyrata (Lyre-leaved rock-cress)#ORFNames=ARALYDRAFT_495799#GO:0005840;GO:0003735;GO:0006412#1F1P1C
- AT5G57060.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: defense response to Gram-negative bacterium, cytolysis; LOCATED IN: integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Channel forming colicin, C-terminal cytotoxic (InterPro:IPR000293); BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT4G26060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:23090666-23091796 FORWARD LENGTH=137
- Repeat List (scaffold5830)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca47792.1 |
8 |
94 |
114 |
53.5 |
87 |
70 |
1e-29
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|D7MMA1_ARALL |
40 |
127 |
138 |
63.76 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca47792.1 |
8 |
94 |
114 |
53.5 |
87 |
70 |
1e-30
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT5G57060.1 |
39 |
126 |
137 |
64.23 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold5830 |
Augustus |
mRNA |
15564 |
16055 |
. |
- |
. |
ID=Dca47792.1;Parent=Dca47792 |
| scaffold5830 |
Augustus |
exon |
15564 |
15640 |
. |
- |
. |
ID=Dca47792.1.exon1;Parent=Dca47792.1 |
| scaffold5830 |
Augustus |
exon |
15710 |
15837 |
. |
- |
. |
ID=Dca47792.1.exon2;Parent=Dca47792.1 |
| scaffold5830 |
Augustus |
exon |
15916 |
16055 |
. |
- |
. |
ID=Dca47792.1.exon3;Parent=Dca47792.1 |
