Dca47795.1
Annotation
- 3-exons
- f-1
- sp|Q10HF0_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os03g39400#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold5831)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca47795.1 |
48 |
359 |
361 |
50.41 |
312 |
53 |
3e-102
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q10HF0_ORYSJ |
519 |
865 |
1073 |
32.33 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca47795.1 |
50 |
194 |
361 |
16.34 |
145 |
40 |
2e-27
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
484 |
631 |
1428 |
10.36 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold5831 |
Augustus |
mRNA |
20222 |
22402 |
. |
+ |
. |
ID=Dca47795.1;Parent=Dca47795 |
| scaffold5831 |
Augustus |
exon |
20222 |
20357 |
. |
+ |
. |
ID=Dca47795.1.exon1;Parent=Dca47795.1 |
| scaffold5831 |
Augustus |
exon |
20885 |
21325 |
. |
+ |
. |
ID=Dca47795.1.exon2;Parent=Dca47795.1 |
| scaffold5831 |
Augustus |
exon |
21894 |
22402 |
. |
+ |
. |
ID=Dca47795.1.exon3;Parent=Dca47795.1 |
