Carnation DB

Dca48087.1

Annotation

7-exons
f-1
sp|B9N010_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_742328#GO:0005576;GO:0004650;GO:0005975;GO:0007047#1F2P1C
AT1G23460.1 | Symbols: | Pectin lyase-like superfamily protein | chr1:8327382-8329622 FORWARD LENGTH=460
Repeat List (scaffold59)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca48087.1	18	358	363	59.77	341	56	3e-114
Target_name	Start	End	Length	Cov(%)
sp\|B9N010_POPTR	41	433	445	88.31

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca48087.1	37	362	363	55.09	326	54	2e-106
Target_name	Start	End	Length	Cov(%)
AT1G23460.1	65	440	460	81.73

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold59	Augustus	mRNA	137825	141118	.	+	.	ID=Dca48087.1;Parent=Dca48087
scaffold59	Augustus	exon	137825	137992	.	+	.	ID=Dca48087.1.exon1;Parent=Dca48087.1
scaffold59	Augustus	exon	139103	139273	.	+	.	ID=Dca48087.1.exon2;Parent=Dca48087.1
scaffold59	Augustus	exon	139968	140175	.	+	.	ID=Dca48087.1.exon3;Parent=Dca48087.1
scaffold59	Augustus	exon	140292	140373	.	+	.	ID=Dca48087.1.exon4;Parent=Dca48087.1
scaffold59	Augustus	exon	140461	140569	.	+	.	ID=Dca48087.1.exon5;Parent=Dca48087.1
scaffold59	Augus-PASA	exon	140677	140793	.	+	.	ID=Dca48087.1.exon6;Parent=Dca48087.1
scaffold59	Augus-PASA	exon	140882	141118	.	+	.	ID=Dca48087.1.exon7;Parent=Dca48087.1