Carnation DB

Dca48280.1

Annotation

7-exons
f-1
sp|B9SPA3_RICCO#Squamous cell carcinoma antigen recognized by T-cells, putative#Ricinus communis (Castor bean)#ORFNames=RCOM_0495780#GO:0005622;GO:0003676;GO:0000166;GO:0006396#2F1P1C
Repeat List (scaffold5939)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca48280.1	11	417	418	53.11	407	54	5e-112
Target_name	Start	End	Length	Cov(%)
sp\|B9SPA3_RICCO	452	851	852	46.94

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca48280.1	1	418	418	47.12	418	47	1e-93
Target_name	Start	End	Length	Cov(%)
AT4G24270.2	422	817	817	48.47

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold5939	Augustus	mRNA	11956	14933	.	+	.	ID=Dca48280.1;Parent=Dca48280
scaffold5939	Augustus	exon	11956	12134	.	+	.	ID=Dca48280.1.exon1;Parent=Dca48280.1
scaffold5939	Augustus	exon	12230	12353	.	+	.	ID=Dca48280.1.exon2;Parent=Dca48280.1
scaffold5939	Augustus	exon	12636	12710	.	+	.	ID=Dca48280.1.exon3;Parent=Dca48280.1
scaffold5939	Augustus	exon	13244	13624	.	+	.	ID=Dca48280.1.exon4;Parent=Dca48280.1
scaffold5939	Augustus	exon	13731	13823	.	+	.	ID=Dca48280.1.exon5;Parent=Dca48280.1
scaffold5939	Augustus	exon	14038	14194	.	+	.	ID=Dca48280.1.exon6;Parent=Dca48280.1
scaffold5939	Augustus	exon	14686	14933	.	+	.	ID=Dca48280.1.exon7;Parent=Dca48280.1