Dca48342.1
Annotation
- 3-exons
- f-1
- sp|E2DN01_BETVU#Putative uncharacterized protein#Beta vulgaris (Sugar beet)#unknown#GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006278#3F2P0C
- sp|Q9FZN9_ARATH#Retroelement pol polyprotein-like#Arabidopsis thaliana (Mouse-ear cress)#unknown#GO:0003723;GO:0003964;GO:0015074;GO:0006278#2F2P0C
- Repeat List (scaffold5953)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca48342.1 |
141 |
910 |
965 |
41.34 |
770 |
52 |
0
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|E2DN01_BETVU |
15 |
761 |
1717 |
43.5 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca48342.1 |
618 |
735 |
965 |
4.35 |
118 |
36 |
5e-12
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os12t0292200-01 |
73 |
189 |
192 |
60.93 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold5953 |
Augustus |
mRNA |
10330 |
13547 |
. |
+ |
. |
ID=Dca48342.1;Parent=Dca48342 |
| scaffold5953 |
Augustus |
exon |
10330 |
10639 |
. |
+ |
. |
ID=Dca48342.1.exon1;Parent=Dca48342.1 |
| scaffold5953 |
Augustus |
exon |
10798 |
12299 |
. |
+ |
. |
ID=Dca48342.1.exon2;Parent=Dca48342.1 |
| scaffold5953 |
Augustus |
exon |
12462 |
13547 |
. |
+ |
. |
ID=Dca48342.1.exon3;Parent=Dca48342.1 |
