Carnation DB

Dca48397.1

Annotation

7-exons
f-1
sp|A9P901_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_817941#unknown#0F0P0C
AT3G02700.1 | Symbols: | NC domain-containing protein-related | chr3:581727-582813 REVERSE LENGTH=252
Repeat List (scaffold597)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca48397.1	378	585	618	25.08	208	75	8e-86
Target_name	Start	End	Length	Cov(%)
sp\|A9P901_POPTR	30	236	254	81.49

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca48397.1	378	585	618	21.68	208	65	9e-69
Target_name	Start	End	Length	Cov(%)
AT3G02700.1	30	233	252	80.95

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold597	Augus-PASA	mRNA	107277	117443	.	-	.	ID=Dca48397.1;Parent=Dca48397
scaffold597	Augus-PASA	exon	107277	107995	.	-	.	ID=Dca48397.1.exon1;Parent=Dca48397.1
scaffold597	Augustus	exon	110992	111020	.	-	.	ID=Dca48397.1.exon2;Parent=Dca48397.1
scaffold597	Augustus	exon	114393	114459	.	-	.	ID=Dca48397.1.exon3;Parent=Dca48397.1
scaffold597	Augus-PASA	exon	114667	114844	.	-	.	ID=Dca48397.1.exon4;Parent=Dca48397.1
scaffold597	Augus-PASA	exon	114934	115014	.	-	.	ID=Dca48397.1.exon5;Parent=Dca48397.1
scaffold597	Augus-PASA	exon	115119	115807	.	-	.	ID=Dca48397.1.exon6;Parent=Dca48397.1
scaffold597	Augus-PASA	exon	117350	117443	.	-	.	ID=Dca48397.1.exon7;Parent=Dca48397.1