Carnation DB

Dca48555.1

Annotation

8-exons
f-1
sp|B9I492_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_773357#unknown#0F0P0C
AT5G52290.1 | Symbols: SHOC1 | shortage in chiasmata 1 | chr5:21230353-21236554 REVERSE LENGTH=1594
Repeat List (scaffold6)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca48555.1	1	1402	1402	39.22	1402	38	0
Target_name	Start	End	Length	Cov(%)
sp\|B9I492_POPTR	1	1332	1337	99.62

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca48555.1	709	1391	1402	19.04	683	38	1e-97
Target_name	Start	End	Length	Cov(%)
AT5G52290.1	917	1593	1594	42.47

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold6	Augustus	mRNA	317158	323549	.	-	.	ID=Dca48555.1;Parent=Dca48555
scaffold6	Augustus	exon	317158	317244	.	-	.	ID=Dca48555.1.exon1;Parent=Dca48555.1
scaffold6	Augustus	exon	317548	319248	.	-	.	ID=Dca48555.1.exon2;Parent=Dca48555.1
scaffold6	Augustus	exon	319528	319989	.	-	.	ID=Dca48555.1.exon3;Parent=Dca48555.1
scaffold6	Augustus	exon	320093	321505	.	-	.	ID=Dca48555.1.exon4;Parent=Dca48555.1
scaffold6	Augustus	exon	321625	321696	.	-	.	ID=Dca48555.1.exon5;Parent=Dca48555.1
scaffold6	Augustus	exon	321796	321882	.	-	.	ID=Dca48555.1.exon6;Parent=Dca48555.1
scaffold6	Augustus	exon	321964	322050	.	-	.	ID=Dca48555.1.exon7;Parent=Dca48555.1
scaffold6	Augustus	exon	323250	323549	.	-	.	ID=Dca48555.1.exon8;Parent=Dca48555.1