Dca48579.1
Annotation
- 3-exons
- f-1
- sp|B9R8W7_RICCO#Putative uncharacterized protein#Ricinus communis (Castor bean)#ORFNames=RCOM_1602580#unknown#0F0P0C
- AT1G76660.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G52430.1); Has 353 Blast hits to 231 proteins in 60 species: Archae - 0; Bacteria - 6; Metazoa - 57; Fungi - 22; Plants - 125; Viruses - 4; Other Eukaryotes - 139 (source: NCBI BLink). | chr1:28769157-28771036 REVERSE LENGTH=431
- Repeat List (scaffold6)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca48579.1 |
1 |
443 |
443 |
62.3 |
443 |
58 |
4e-139
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|B9R8W7_RICCO |
1 |
472 |
472 |
100 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca48579.1 |
1 |
437 |
443 |
54.4 |
437 |
53 |
3e-108
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT1G76660.1 |
1 |
424 |
431 |
98.37 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold6 |
Augustus |
mRNA |
520175 |
522653 |
. |
+ |
. |
ID=Dca48579.1;Parent=Dca48579 |
| scaffold6 |
Augustus |
exon |
520175 |
520213 |
. |
+ |
. |
ID=Dca48579.1.exon1;Parent=Dca48579.1 |
| scaffold6 |
Augustus |
exon |
521134 |
522226 |
. |
+ |
. |
ID=Dca48579.1.exon2;Parent=Dca48579.1 |
| scaffold6 |
Augustus |
exon |
522454 |
522653 |
. |
+ |
. |
ID=Dca48579.1.exon3;Parent=Dca48579.1 |
