Dca48876.1
Annotation
- 3-exons
- f-1
- sp|Q9ZPU4_ARATH#Putative retroelement pol polyprotein#Arabidopsis thaliana (Mouse-ear cress)#Name=At2g13940#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold606)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca48876.1 |
104 |
165 |
165 |
14.54 |
62 |
38 |
7e-07
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q9ZPU4_ARATH |
13 |
76 |
1501 |
4.26 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca48876.1 |
2 |
58 |
165 |
14.54 |
57 |
43 |
2e-07
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| ATMG00240.1 |
22 |
78 |
111 |
51.35 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold606 |
Augustus |
mRNA |
18814 |
20130 |
. |
+ |
. |
ID=Dca48876.1;Parent=Dca48876 |
| scaffold606 |
Augustus |
exon |
18814 |
18990 |
. |
+ |
. |
ID=Dca48876.1.exon1;Parent=Dca48876.1 |
| scaffold606 |
Augustus |
exon |
19238 |
19369 |
. |
+ |
. |
ID=Dca48876.1.exon2;Parent=Dca48876.1 |
| scaffold606 |
Augustus |
exon |
19942 |
20130 |
. |
+ |
. |
ID=Dca48876.1.exon3;Parent=Dca48876.1 |
