Carnation DB

Dca48933.1

Annotation

5-exons
f-1
sp|D3IVU0_9POAL#Putative retrotransposon protein#Phyllostachys edulis#unknown#GO:0003676;GO:0008270;GO:0015074#2F1P0C
Repeat List (scaffold6072)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca48933.1	16	56	59	61.01	41	88	1e-14
Target_name	Start	End	Length	Cov(%)
sp\|Q8W3S5_SILCU	47	87	92	44.56

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca48933.1	227	420	441	17	194	30	8e-19
Target_name	Start	End	Length	Cov(%)
Os11t0656500-01	1136	1378	1401	17.34

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold6072	Augustus	mRNA	10505	15677	.	+	.	ID=Dca48933.1;Parent=Dca48933
scaffold6072	Augustus	exon	10505	11057	.	+	.	ID=Dca48933.1.exon1;Parent=Dca48933.1
scaffold6072	Augustus	exon	14569	14690	.	+	.	ID=Dca48933.1.exon2;Parent=Dca48933.1
scaffold6072	Augustus	exon	14852	15096	.	+	.	ID=Dca48933.1.exon3;Parent=Dca48933.1
scaffold6072	Augustus	exon	15206	15385	.	+	.	ID=Dca48933.1.exon4;Parent=Dca48933.1
scaffold6072	Augustus	exon	15452	15677	.	+	.	ID=Dca48933.1.exon5;Parent=Dca48933.1