Carnation DB

Dca48980.1

Annotation

9-exons
f-1
sp|D7T9G4_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_01s0011g02190#unknown#0F0P0C
AT1G50120.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Rgp1 (InterPro:IPR014848), Immunoglobulin E-set (InterPro:IPR014756); Has 144 Blast hits to 140 proteins in 61 species: Archae - 0; Bacteria - 0; Metazoa - 86; Fungi - 10; Plants - 39; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink). | chr1:18562302-18566015 FORWARD LENGTH=532
Repeat List (scaffold608)

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca48980.1	41	502	503	52.88	462	52	3e-143
Target_name	Start	End	Length	Cov(%)
sp\|D7T9G4_VITVI	34	551	552	93.84

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca48980.1	6	502	503	49.3	497	46	5e-122
Target_name	Start	End	Length	Cov(%)
AT1G50120.1	2	531	532	99.62

seqname	source	feature	start	end	score	strand	frame	group
scaffold608	Augustus	mRNA	141182	145975	.	-	.	ID=Dca48980.1;Parent=Dca48980
scaffold608	Augustus	exon	141182	141332	.	-	.	ID=Dca48980.1.exon1;Parent=Dca48980.1
scaffold608	Augustus	exon	141749	141912	.	-	.	ID=Dca48980.1.exon2;Parent=Dca48980.1
scaffold608	Augustus	exon	142751	143010	.	-	.	ID=Dca48980.1.exon3;Parent=Dca48980.1
scaffold608	Augustus	exon	143111	143318	.	-	.	ID=Dca48980.1.exon4;Parent=Dca48980.1
scaffold608	Augustus	exon	143425	143492	.	-	.	ID=Dca48980.1.exon5;Parent=Dca48980.1
scaffold608	Augustus	exon	143721	143796	.	-	.	ID=Dca48980.1.exon6;Parent=Dca48980.1
scaffold608	Augustus	exon	144093	144250	.	-	.	ID=Dca48980.1.exon7;Parent=Dca48980.1
scaffold608	Augustus	exon	144680	144757	.	-	.	ID=Dca48980.1.exon8;Parent=Dca48980.1
scaffold608	Augustus	exon	145627	145975	.	-	.	ID=Dca48980.1.exon9;Parent=Dca48980.1