Dca49388.1
Annotation
- 2-exons
- f-1
- sp|Q7XES7_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os10g26920#GO:0003676;GO:0004523;GO:0015074#2F1P0C
- Repeat List (scaffold617)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca49388.1 |
1 |
143 |
191 |
34.55 |
143 |
43 |
6e-22
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q7XES7_ORYSJ |
1099 |
1246 |
1725 |
8.57 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca49388.1 |
1 |
73 |
191 |
12.56 |
73 |
33 |
1e-07
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0202300-03 |
277 |
345 |
591 |
11.67 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold617 |
Augustus |
mRNA |
30553 |
31324 |
. |
+ |
. |
ID=Dca49388.1;Parent=Dca49388 |
| scaffold617 |
Augustus |
exon |
30553 |
30788 |
. |
+ |
. |
ID=Dca49388.1.exon1;Parent=Dca49388.1 |
| scaffold617 |
Augustus |
exon |
30985 |
31324 |
. |
+ |
. |
ID=Dca49388.1.exon2;Parent=Dca49388.1 |
