Dca49398.1
Annotation
- 2-exons
- f-1
- sp|E2DN01_BETVU#Putative uncharacterized protein#Beta vulgaris (Sugar beet)#unknown#GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006278#3F2P0C
- sp|Q2QTD3_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g20040#GO:0003723;GO:0003964;GO:0006278#2F1P0C
- Repeat List (scaffold6171)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca49398.1 |
1 |
179 |
179 |
81.56 |
179 |
75 |
4e-81
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|E2DN01_BETVU |
1085 |
1279 |
1717 |
11.35 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca49398.1 |
8 |
167 |
179 |
35.75 |
160 |
38 |
5e-32
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0202300-03 |
219 |
390 |
591 |
29.1 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold6171 |
Augustus |
mRNA |
16070 |
16962 |
. |
+ |
. |
ID=Dca49398.1;Parent=Dca49398 |
| scaffold6171 |
Augustus |
exon |
16070 |
16447 |
. |
+ |
. |
ID=Dca49398.1.exon1;Parent=Dca49398.1 |
| scaffold6171 |
Augustus |
exon |
16801 |
16962 |
. |
+ |
. |
ID=Dca49398.1.exon2;Parent=Dca49398.1 |
