Carnation DB

Dca49527.1

Annotation

10-exons
f-1
sp|B9MWE6_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_836505#GO:0005524;GO:0000287;GO:0004826;GO:0000049;GO:0006432;GO:0008033#4F2P0C
Os12t0533700-01 Phenylalanyl-tRNA synthetase, class IIc, mitochondrial domain containing protein.
Repeat List (scaffold62)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca49527.1	57	441	441	73.46	385	85	0
Target_name	Start	End	Length	Cov(%)
sp\|B9MWE6_POPTR	43	426	426	90.14

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca49527.1	75	441	441	67.8	367	82	0
Target_name	Start	End	Length	Cov(%)
Os12t0533700-01	81	448	449	81.95

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold62	Augustus	mRNA	187102	190481	.	+	.	ID=Dca49527.1;Parent=Dca49527
scaffold62	Augustus	exon	187102	187339	.	+	.	ID=Dca49527.1.exon1;Parent=Dca49527.1
scaffold62	Augustus	exon	188005	188195	.	+	.	ID=Dca49527.1.exon2;Parent=Dca49527.1
scaffold62	Augustus	exon	188677	188883	.	+	.	ID=Dca49527.1.exon3;Parent=Dca49527.1
scaffold62	Augus-PASA	exon	188972	189089	.	+	.	ID=Dca49527.1.exon4;Parent=Dca49527.1
scaffold62	Augus-PASA	exon	189223	189299	.	+	.	ID=Dca49527.1.exon5;Parent=Dca49527.1
scaffold62	Augus-PASA	exon	189370	189549	.	+	.	ID=Dca49527.1.exon6;Parent=Dca49527.1
scaffold62	Augus-PASA	exon	189637	189681	.	+	.	ID=Dca49527.1.exon7;Parent=Dca49527.1
scaffold62	Augus-PASA	exon	189954	190058	.	+	.	ID=Dca49527.1.exon8;Parent=Dca49527.1
scaffold62	Augus-PASA	exon	190240	190353	.	+	.	ID=Dca49527.1.exon9;Parent=Dca49527.1
scaffold62	Augus-PASA	exon	190431	190481	.	+	.	ID=Dca49527.1.exon10;Parent=Dca49527.1