Carnation DB

Dca49569.1

Annotation

8-exons
f-1
sp|B9HDB8_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_561627#GO:0008318;GO:0018342#1F1P0C
AT4G24490.1 | Symbols: RGTA1, ATRGTA1 | RAB geranylgeranyl transferase alpha subunit 1 | chr4:12655330-12658103 REVERSE LENGTH=678
Repeat List (scaffold620)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca49569.1	1	685	685	56.35	685	55	0
Target_name	Start	End	Length	Cov(%)
sp\|B9HDB8_POPTR	1	695	696	99.85

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca49569.1	1	681	685	50.94	681	50	4e-177
Target_name	Start	End	Length	Cov(%)
AT4G24490.1	1	671	678	98.96

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold620	Augus-PASA	mRNA	110563	115415	.	+	.	ID=Dca49569.1;Parent=Dca49569
scaffold620	Augus-PASA	exon	110563	110678	.	+	.	ID=Dca49569.1.exon1;Parent=Dca49569.1
scaffold620	Augus-PASA	exon	110804	110957	.	+	.	ID=Dca49569.1.exon2;Parent=Dca49569.1
scaffold620	Augus-PASA	exon	111868	112028	.	+	.	ID=Dca49569.1.exon3;Parent=Dca49569.1
scaffold620	Augus-PASA	exon	112113	112217	.	+	.	ID=Dca49569.1.exon4;Parent=Dca49569.1
scaffold620	Augustus	exon	112337	113089	.	+	.	ID=Dca49569.1.exon5;Parent=Dca49569.1
scaffold620	Augustus	exon	113217	113409	.	+	.	ID=Dca49569.1.exon6;Parent=Dca49569.1
scaffold620	Augustus	exon	114339	114525	.	+	.	ID=Dca49569.1.exon7;Parent=Dca49569.1
scaffold620	Augustus	exon	115027	115415	.	+	.	ID=Dca49569.1.exon8;Parent=Dca49569.1