Carnation DB

Dca50259.1

Annotation

7-exons
f-1
sp|B9IHN3_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_576137#GO:0005634;GO:0003677;GO:0006351#1F1P1C
AT5G05140.1 | Symbols: | Transcription elongation factor (TFIIS) family protein | chr5:1520353-1522297 FORWARD LENGTH=436
Repeat List (scaffold6369)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca50259.1	1	328	333	53.45	328	48	6e-74
Target_name	Start	End	Length	Cov(%)
sp\|B9IHN3_POPTR	29	397	474	77.84

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca50259.1	1	328	333	41.44	328	41	3e-57
Target_name	Start	End	Length	Cov(%)
AT5G05140.1	31	355	436	74.54

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold6369	Augustus	mRNA	19	2404	.	-	.	ID=Dca50259.1;Parent=Dca50259
scaffold6369	Augustus	exon	19	257	.	-	.	ID=Dca50259.1.exon1;Parent=Dca50259.1
scaffold6369	Augustus	exon	382	409	.	-	.	ID=Dca50259.1.exon2;Parent=Dca50259.1
scaffold6369	Augustus	exon	511	626	.	-	.	ID=Dca50259.1.exon3;Parent=Dca50259.1
scaffold6369	Augustus	exon	731	783	.	-	.	ID=Dca50259.1.exon4;Parent=Dca50259.1
scaffold6369	Augustus	exon	1146	1228	.	-	.	ID=Dca50259.1.exon5;Parent=Dca50259.1
scaffold6369	Augustus	exon	1330	1398	.	-	.	ID=Dca50259.1.exon6;Parent=Dca50259.1
scaffold6369	Augustus	exon	1994	2404	.	-	.	ID=Dca50259.1.exon7;Parent=Dca50259.1