Dca50323.1
Annotation
- 3-exons
- f-1
- sp|Q2QUJ5_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g16050#GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006278#3F2P0C
- Repeat List (scaffold639)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca50323.1 |
221 |
721 |
721 |
24.96 |
501 |
35 |
2e-78
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QUJ5_ORYSJ |
56 |
535 |
1325 |
36.22 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca50323.1 |
525 |
721 |
721 |
9.29 |
197 |
34 |
3e-25
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os12t0142900-02 |
125 |
325 |
707 |
28.42 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold639 |
Augustus |
mRNA |
80631 |
83345 |
. |
- |
. |
ID=Dca50323.1;Parent=Dca50323 |
| scaffold639 |
Augustus |
exon |
80631 |
81232 |
. |
- |
. |
ID=Dca50323.1.exon1;Parent=Dca50323.1 |
| scaffold639 |
Augustus |
exon |
81512 |
82551 |
. |
- |
. |
ID=Dca50323.1.exon2;Parent=Dca50323.1 |
| scaffold639 |
Augustus |
exon |
82822 |
83345 |
. |
- |
. |
ID=Dca50323.1.exon3;Parent=Dca50323.1 |
