Carnation DB

Dca5042.1

Annotation

6-exons
f-3
sp|E2DN01_BETVU#Putative uncharacterized protein#Beta vulgaris (Sugar beet)#unknown#GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006278#3F2P0C
Os09t0122300-01 Similar to Zinc knuckle family protein.
Repeat List (scaffold11921)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5042.1	252	384	833	5.4	133	34	2e-14
Target_name	Start	End	Length	Cov(%)
sp\|E2DN01_BETVU	132	262	1717	7.62

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5042.1	508	600	833	3.84	93	35	3e-08
Target_name	Start	End	Length	Cov(%)
Os12t0292200-01	98	189	192	47.91

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold11921	Augustus	mRNA	245	6345	.	+	.	ID=Dca5042.1;Parent=Dca5042
scaffold11921	Augustus	exon	245	369	.	+	.	ID=Dca5042.1.exon1;Parent=Dca5042.1
scaffold11921	Augustus	exon	446	604	.	+	.	ID=Dca5042.1.exon2;Parent=Dca5042.1
scaffold11921	Augustus	exon	701	1018	.	+	.	ID=Dca5042.1.exon3;Parent=Dca5042.1
scaffold11921	Augustus	exon	1095	1247	.	+	.	ID=Dca5042.1.exon4;Parent=Dca5042.1
scaffold11921	Augustus	exon	3725	4168	.	+	.	ID=Dca5042.1.exon5;Parent=Dca5042.1
scaffold11921	Augustus	exon	5041	6345	.	+	.	ID=Dca5042.1.exon6;Parent=Dca5042.1