Carnation DB

Dca50422.1

Annotation

8-exons
f-1
sp|F6HCH7_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_11s0118g00500#unknown#0F0P0C
AT5G35080.1 | Symbols: | INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-6-phosphate receptor, binding (InterPro:IPR009011), Glucosidase II beta subunit-like (InterPro:IPR012913); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:13354552-13356725 REVERSE LENGTH=282
Repeat List (scaffold640)

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca50422.1	28	278	306	59.15	251	73	7e-109
Target_name	Start	End	Length	Cov(%)
sp\|F6HCH7_VITVI	21	271	299	83.94

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca50422.1	13	278	306	50	266	57	5e-86
Target_name	Start	End	Length	Cov(%)
AT5G35080.1	3	264	282	92.9

seqname	source	feature	start	end	score	strand	frame	group
scaffold640	Augus-PASA	mRNA	36772	40239	.	+	.	ID=Dca50422.1;Parent=Dca50422
scaffold640	Augus-PASA	exon	36772	36889	.	+	.	ID=Dca50422.1.exon1;Parent=Dca50422.1
scaffold640	Augus-PASA	exon	38390	38466	.	+	.	ID=Dca50422.1.exon2;Parent=Dca50422.1
scaffold640	Augus-PASA	exon	38911	39114	.	+	.	ID=Dca50422.1.exon3;Parent=Dca50422.1
scaffold640	Augus-PASA	exon	39275	39346	.	+	.	ID=Dca50422.1.exon4;Parent=Dca50422.1
scaffold640	Augus-PASA	exon	39431	39546	.	+	.	ID=Dca50422.1.exon5;Parent=Dca50422.1
scaffold640	Augus-PASA	exon	39638	39704	.	+	.	ID=Dca50422.1.exon6;Parent=Dca50422.1
scaffold640	Augus-PASA	exon	39781	39887	.	+	.	ID=Dca50422.1.exon7;Parent=Dca50422.1
scaffold640	Augus-PASA	exon	40080	40239	.	+	.	ID=Dca50422.1.exon8;Parent=Dca50422.1