Carnation DB

Dca50501.1

Annotation

5-exons
f-1
sp|E5GCE2_CUCME#Ty3-gypsy retrotransposon protein#Cucumis melo subsp melo#unknown#GO:0003723;GO:0003964;GO:0015074;GO:0006278#2F2P0C
Repeat List (scaffold642)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca50501.1	5	313	313	46.64	309	33	2e-53
Target_name	Start	End	Length	Cov(%)
sp\|E5GCE2_CUCME	496	935	1359	32.37

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca50501.1	4	129	313	19.8	126	30	6e-16
Target_name	Start	End	Length	Cov(%)
Os04t0191000-01	632	843	1539	13.77

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold642	Augustus	mRNA	26011	27563	.	+	.	ID=Dca50501.1;Parent=Dca50501
scaffold642	Augustus	exon	26011	26079	.	+	.	ID=Dca50501.1.exon1;Parent=Dca50501.1
scaffold642	Augustus	exon	26187	26319	.	+	.	ID=Dca50501.1.exon2;Parent=Dca50501.1
scaffold642	Augustus	exon	26482	26620	.	+	.	ID=Dca50501.1.exon3;Parent=Dca50501.1
scaffold642	Augustus	exon	26831	26964	.	+	.	ID=Dca50501.1.exon4;Parent=Dca50501.1
scaffold642	Augustus	exon	27097	27563	.	+	.	ID=Dca50501.1.exon5;Parent=Dca50501.1