Dca50623.1
Annotation
- 2-exons
- f-1
- sp|Q2RAY7_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os11g03830#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold6450)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca50623.1 |
13 |
474 |
474 |
42.4 |
462 |
40 |
5e-100
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2RAY7_ORYSJ |
237 |
682 |
1138 |
39.19 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca50623.1 |
5 |
301 |
474 |
20.67 |
297 |
33 |
6e-38
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
348 |
649 |
1428 |
21.14 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold6450 |
Augustus |
mRNA |
850 |
2576 |
. |
+ |
. |
ID=Dca50623.1;Parent=Dca50623 |
| scaffold6450 |
Augustus |
exon |
850 |
1753 |
. |
+ |
. |
ID=Dca50623.1.exon1;Parent=Dca50623.1 |
| scaffold6450 |
Augustus |
exon |
2056 |
2576 |
. |
+ |
. |
ID=Dca50623.1.exon2;Parent=Dca50623.1 |
