Carnation DB

Dca51518.1

Annotation

7-exons
f-1
sp|A5ATD4_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#ORFNames=VITISV_021080#GO:0016020#0F0P1C
AT5G59400.2 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: PGR5-like B (TAIR:AT4G11960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:23957756-23959518 FORWARD LENGTH=301
Repeat List (scaffold6686)

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca51518.1	30	299	311	54.98	270	64	4e-95
Target_name	Start	End	Length	Cov(%)
sp\|A5ATD4_VITVI	781	1047	1059	25.21

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca51518.1	70	307	311	50.48	238	65	3e-88
Target_name	Start	End	Length	Cov(%)
AT5G59400.2	56	297	301	80.39

seqname	source	feature	start	end	score	strand	frame	group
scaffold6686	Augus-PASA	mRNA	10789	14921	.	+	.	ID=Dca51518.1;Parent=Dca51518
scaffold6686	Augus-PASA	exon	10789	11070	.	+	.	ID=Dca51518.1.exon1;Parent=Dca51518.1
scaffold6686	Augus-PASA	exon	11181	11243	.	+	.	ID=Dca51518.1.exon2;Parent=Dca51518.1
scaffold6686	Augus-PASA	exon	13019	13105	.	+	.	ID=Dca51518.1.exon3;Parent=Dca51518.1
scaffold6686	Augus-PASA	exon	13474	13711	.	+	.	ID=Dca51518.1.exon4;Parent=Dca51518.1
scaffold6686	Augus-PASA	exon	14150	14223	.	+	.	ID=Dca51518.1.exon5;Parent=Dca51518.1
scaffold6686	Augus-PASA	exon	14322	14420	.	+	.	ID=Dca51518.1.exon6;Parent=Dca51518.1
scaffold6686	Augus-PASA	exon	14829	14921	.	+	.	ID=Dca51518.1.exon7;Parent=Dca51518.1