Carnation DB

Dca51583.1

Annotation

6-exons
f-1
sp|B9I875_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_1097401#GO:0003676;GO:0000166#2F0P0C
Os01t0876800-00 RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
Repeat List (scaffold67)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca51583.1	17	266	287	54.35	250	61	2e-75
Target_name	Start	End	Length	Cov(%)
sp\|B9I875_POPTR	8	251	266	91.72

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca51583.1	3	283	287	53.31	281	53	2e-64
Target_name	Start	End	Length	Cov(%)
Os01t0876800-00	1	270	301	89.7

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold67	Augus-PASA	mRNA	149644	155816	.	+	.	ID=Dca51583.1;Parent=Dca51583
scaffold67	Augus-PASA	exon	149644	149853	.	+	.	ID=Dca51583.1.exon1;Parent=Dca51583.1
scaffold67	Augus-PASA	exon	150946	151090	.	+	.	ID=Dca51583.1.exon2;Parent=Dca51583.1
scaffold67	Augus-PASA	exon	152077	152230	.	+	.	ID=Dca51583.1.exon3;Parent=Dca51583.1
scaffold67	Augus-PASA	exon	154746	154782	.	+	.	ID=Dca51583.1.exon4;Parent=Dca51583.1
scaffold67	Augus-PASA	exon	155331	155607	.	+	.	ID=Dca51583.1.exon5;Parent=Dca51583.1
scaffold67	Augus-PASA	exon	155776	155816	.	+	.	ID=Dca51583.1.exon6;Parent=Dca51583.1