Carnation DB

Dca51659.1

Annotation

13-exons
f-1
sp|B9IPR8_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_836058#GO:0005484;GO:0006886;GO:0016192#1F2P0C
sp|B9SIA7_RICCO#Syntaxin, putative#Ricinus communis (Castor bean)#ORFNames=RCOM_1322390#GO:0016020;GO:0005484;GO:0006886;GO:0016192#1F2P1C
Repeat List (scaffold671)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca51659.1	1	305	305	78.68	305	79	4e-125
Target_name	Start	End	Length	Cov(%)
sp\|B9IPR8_POPTR	1	304	304	100

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca51659.1	1	305	305	69.5	305	70	5e-118
Target_name	Start	End	Length	Cov(%)
AT3G03800.1	1	306	306	100

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold671	Augus-PASA	mRNA	101439	107187	.	+	.	ID=Dca51659.1;Parent=Dca51659
scaffold671	Augus-PASA	exon	101439	101456	.	+	.	ID=Dca51659.1.exon1;Parent=Dca51659.1
scaffold671	Augus-PASA	exon	102780	102881	.	+	.	ID=Dca51659.1.exon2;Parent=Dca51659.1
scaffold671	Augus-PASA	exon	103060	103116	.	+	.	ID=Dca51659.1.exon3;Parent=Dca51659.1
scaffold671	Augus-PASA	exon	103264	103312	.	+	.	ID=Dca51659.1.exon4;Parent=Dca51659.1
scaffold671	Augus-PASA	exon	104140	104228	.	+	.	ID=Dca51659.1.exon5;Parent=Dca51659.1
scaffold671	Augus-PASA	exon	104302	104375	.	+	.	ID=Dca51659.1.exon6;Parent=Dca51659.1
scaffold671	Augus-PASA	exon	105061	105103	.	+	.	ID=Dca51659.1.exon7;Parent=Dca51659.1
scaffold671	Augus-PASA	exon	105186	105246	.	+	.	ID=Dca51659.1.exon8;Parent=Dca51659.1
scaffold671	Augus-PASA	exon	105342	105367	.	+	.	ID=Dca51659.1.exon9;Parent=Dca51659.1
scaffold671	Augus-PASA	exon	105459	105536	.	+	.	ID=Dca51659.1.exon10;Parent=Dca51659.1
scaffold671	Augus-PASA	exon	106036	106116	.	+	.	ID=Dca51659.1.exon11;Parent=Dca51659.1
scaffold671	Augus-PASA	exon	106830	106895	.	+	.	ID=Dca51659.1.exon12;Parent=Dca51659.1
scaffold671	Augus-PASA	exon	107014	107187	.	+	.	ID=Dca51659.1.exon13;Parent=Dca51659.1