Carnation DB

Dca5189.1

Annotation

9-exons
f-1
sp|B9N4A2_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_267409#unknown#0F0P0C
sp|B6U9N4_MAIZE#Nuclear ribonuclease Z#Zea mays (Maize)#unknown#unknown#0F0P0C
Repeat List (scaffold12)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5189.1	40	311	311	62.7	272	72	1e-118
Target_name	Start	End	Length	Cov(%)
sp\|B9N4A2_POPTR	1	272	272	100

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5189.1	35	311	311	62.7	277	71	5e-117
Target_name	Start	End	Length	Cov(%)
AT1G74700.1	4	280	280	98.92

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold12	Augus-PASA	mRNA	108516	112007	.	+	.	ID=Dca5189.1;Parent=Dca5189
scaffold12	Augus-PASA	exon	108516	108586	.	+	.	ID=Dca5189.1.exon1;Parent=Dca5189.1
scaffold12	Augus-PASA	exon	108733	108934	.	+	.	ID=Dca5189.1.exon2;Parent=Dca5189.1
scaffold12	Augus-PASA	exon	109697	109859	.	+	.	ID=Dca5189.1.exon3;Parent=Dca5189.1
scaffold12	Augus-PASA	exon	110012	110082	.	+	.	ID=Dca5189.1.exon4;Parent=Dca5189.1
scaffold12	Augus-PASA	exon	110175	110270	.	+	.	ID=Dca5189.1.exon5;Parent=Dca5189.1
scaffold12	Augus-PASA	exon	110762	110875	.	+	.	ID=Dca5189.1.exon6;Parent=Dca5189.1
scaffold12	Augus-PASA	exon	111263	111331	.	+	.	ID=Dca5189.1.exon7;Parent=Dca5189.1
scaffold12	Augus-PASA	exon	111431	111505	.	+	.	ID=Dca5189.1.exon8;Parent=Dca5189.1
scaffold12	Augus-PASA	exon	111933	112007	.	+	.	ID=Dca5189.1.exon9;Parent=Dca5189.1