Carnation DB

Dca52250.1

Annotation

9-exons
f-1
sp|B9IHN3_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_576137#GO:0005634;GO:0003677;GO:0006351#1F1P1C
AT5G05140.1 | Symbols: | Transcription elongation factor (TFIIS) family protein | chr5:1520353-1522297 FORWARD LENGTH=436
Repeat List (scaffold6862)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca52250.1	1	401	401	57.35	401	51	5e-104
Target_name	Start	End	Length	Cov(%)
sp\|B9IHN3_POPTR	29	474	474	94.09

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca52250.1	1	401	401	43.14	401	41	2e-73
Target_name	Start	End	Length	Cov(%)
AT5G05140.1	31	436	436	93.11

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold6862	Augus-PASA	mRNA	10523	13476	.	-	.	ID=Dca52250.1;Parent=Dca52250
scaffold6862	Augus-PASA	exon	10523	10647	.	-	.	ID=Dca52250.1.exon1;Parent=Dca52250.1
scaffold6862	Augus-PASA	exon	10766	10856	.	-	.	ID=Dca52250.1.exon2;Parent=Dca52250.1
scaffold6862	Augus-PASA	exon	11085	11314	.	-	.	ID=Dca52250.1.exon3;Parent=Dca52250.1
scaffold6862	Augus-PASA	exon	11439	11466	.	-	.	ID=Dca52250.1.exon4;Parent=Dca52250.1
scaffold6862	Augus-PASA	exon	11568	11683	.	-	.	ID=Dca52250.1.exon5;Parent=Dca52250.1
scaffold6862	Augus-PASA	exon	11803	11855	.	-	.	ID=Dca52250.1.exon6;Parent=Dca52250.1
scaffold6862	Augus-PASA	exon	12218	12300	.	-	.	ID=Dca52250.1.exon7;Parent=Dca52250.1
scaffold6862	Augus-PASA	exon	12402	12470	.	-	.	ID=Dca52250.1.exon8;Parent=Dca52250.1
scaffold6862	Augus-PASA	exon	13066	13476	.	-	.	ID=Dca52250.1.exon9;Parent=Dca52250.1