Dca52928.1
Annotation
- 4-exons
- f-1
- sp|D3IVU0_9POAL#Putative retrotransposon protein#Phyllostachys edulis#unknown#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold700)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca52928.1 |
3 |
491 |
497 |
53.11 |
489 |
48 |
1e-133
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|D3IVU0_9POAL |
381 |
893 |
896 |
57.25 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca52928.1 |
142 |
476 |
497 |
23.13 |
335 |
30 |
3e-39
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os11t0656500-01 |
996 |
1378 |
1401 |
27.33 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold700 |
Augustus |
mRNA |
58633 |
60511 |
. |
+ |
. |
ID=Dca52928.1;Parent=Dca52928 |
| scaffold700 |
Augustus |
exon |
58633 |
59055 |
. |
+ |
. |
ID=Dca52928.1.exon1;Parent=Dca52928.1 |
| scaffold700 |
Augustus |
exon |
59264 |
59359 |
. |
+ |
. |
ID=Dca52928.1.exon2;Parent=Dca52928.1 |
| scaffold700 |
Augustus |
exon |
59432 |
60115 |
. |
+ |
. |
ID=Dca52928.1.exon3;Parent=Dca52928.1 |
| scaffold700 |
Augustus |
exon |
60221 |
60511 |
. |
+ |
. |
ID=Dca52928.1.exon4;Parent=Dca52928.1 |
