Carnation DB

Dca52948.1

Annotation

6-exons
f-1
sp|Q2QRM1_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g27096#GO:0003676;GO:0008270;GO:0015074#2F1P0C
Repeat List (scaffold7009)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca52948.1	27	272	729	12.34	246	34	1e-33
Target_name	Start	End	Length	Cov(%)
sp\|Q2QRM1_ORYSJ	724	991	1745	15.35

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca52948.1	612	708	729	4.93	97	38	2e-09
Target_name	Start	End	Length	Cov(%)
Os11t0656500-01	1284	1378	1401	6.78

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold7009	Augustus	mRNA	9094	12658	.	-	.	ID=Dca52948.1;Parent=Dca52948
scaffold7009	Augustus	exon	9094	9452	.	-	.	ID=Dca52948.1.exon1;Parent=Dca52948.1
scaffold7009	Augustus	exon	9707	10208	.	-	.	ID=Dca52948.1.exon2;Parent=Dca52948.1
scaffold7009	Augustus	exon	10290	10609	.	-	.	ID=Dca52948.1.exon3;Parent=Dca52948.1
scaffold7009	Augustus	exon	10719	10909	.	-	.	ID=Dca52948.1.exon4;Parent=Dca52948.1
scaffold7009	Augustus	exon	11502	12097	.	-	.	ID=Dca52948.1.exon5;Parent=Dca52948.1
scaffold7009	Augustus	exon	12437	12658	.	-	.	ID=Dca52948.1.exon6;Parent=Dca52948.1