Dca53367.1
Annotation
- 3-exons
- f-1
- sp|Q53L81_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy sub-class#Oryza sativa subsp japonica (Rice)#OrderedLocusNames=LOC_Os11g24000#GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006278#3F2P0C
- Repeat List (scaffold7121)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca53367.1 |
1 |
226 |
238 |
64.28 |
226 |
59 |
2e-79
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q53L81_ORYSJ |
462 |
722 |
1158 |
22.53 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca53367.1 |
1 |
172 |
238 |
30.67 |
172 |
36 |
1e-28
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os12t0142900-02 |
290 |
488 |
707 |
28.14 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold7121 |
Augustus |
mRNA |
21988 |
23140 |
. |
+ |
. |
ID=Dca53367.1;Parent=Dca53367 |
| scaffold7121 |
Augustus |
exon |
21988 |
22168 |
. |
+ |
. |
ID=Dca53367.1.exon1;Parent=Dca53367.1 |
| scaffold7121 |
Augustus |
exon |
22262 |
22494 |
. |
+ |
. |
ID=Dca53367.1.exon2;Parent=Dca53367.1 |
| scaffold7121 |
Augustus |
exon |
22838 |
23140 |
. |
+ |
. |
ID=Dca53367.1.exon3;Parent=Dca53367.1 |
