Carnation DB

Dca53388.1

Annotation

11-exons
f-580
sp|F6GU20_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_06s0004g02600#GO:0005634;GO:0005524;GO:0003677;GO:0004386;GO:0008270#4F0P1C
sp|B9I6P2_POPTR#Chromatin remodeling complex subunit#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#Name=CHR945-1#GO:0005634;GO:0005524;GO:0003677;GO:0004386;GO:0008270#4F0P1C
Repeat List (scaffold713)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca53388.1	3	252	650	18.61	250	42	5e-51
Target_name	Start	End	Length	Cov(%)
sp\|F6GU20_VITVI	179	464	1120	25.53

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca53388.1	1	252	650	16.15	252	35	9e-34
Target_name	Start	End	Length	Cov(%)
Os06t0102800-01	320	615	1274	23.23

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold713	Augustus	mRNA	56739	65896	.	+	.	ID=Dca53388.1;Parent=Dca53388
scaffold713	Augustus	exon	56739	56799	.	+	.	ID=Dca53388.1.exon1;Parent=Dca53388.1
scaffold713	Augustus	exon	56905	56997	.	+	.	ID=Dca53388.1.exon2;Parent=Dca53388.1
scaffold713	Augustus	exon	57096	57429	.	+	.	ID=Dca53388.1.exon3;Parent=Dca53388.1
scaffold713	Augustus	exon	57894	57978	.	+	.	ID=Dca53388.1.exon4;Parent=Dca53388.1
scaffold713	Augustus	exon	60097	60184	.	+	.	ID=Dca53388.1.exon5;Parent=Dca53388.1
scaffold713	Augustus	exon	60429	60553	.	+	.	ID=Dca53388.1.exon6;Parent=Dca53388.1
scaffold713	Augustus	exon	60702	60965	.	+	.	ID=Dca53388.1.exon7;Parent=Dca53388.1
scaffold713	Augustus	exon	62570	62698	.	+	.	ID=Dca53388.1.exon8;Parent=Dca53388.1
scaffold713	Augustus	exon	63238	63393	.	+	.	ID=Dca53388.1.exon9;Parent=Dca53388.1
scaffold713	Augustus	exon	64155	64331	.	+	.	ID=Dca53388.1.exon10;Parent=Dca53388.1
scaffold713	Augustus	exon	64877	65896	.	+	.	ID=Dca53388.1.exon11;Parent=Dca53388.1