Dca53530.1
Annotation
- 3-exons
- f-1
- sp|Q33AA6_ORYSJ#Retrotransposon protein, putative, Ty3-gypsy subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os10g13300#GO:0003723;GO:0003964;GO:0008270;GO:0015074;GO:0006278#3F2P0C
- Repeat List (scaffold7170)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca53530.1 |
1 |
508 |
508 |
59.84 |
508 |
56 |
6e-170
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q33AA6_ORYSJ |
312 |
858 |
989 |
55.3 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca53530.1 |
195 |
505 |
508 |
19.68 |
311 |
33 |
2e-39
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os04t0191000-01 |
866 |
1147 |
1539 |
18.32 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold7170 |
Augustus |
mRNA |
4274 |
6101 |
. |
- |
. |
ID=Dca53530.1;Parent=Dca53530 |
| scaffold7170 |
Augustus |
exon |
4274 |
5240 |
. |
- |
. |
ID=Dca53530.1.exon1;Parent=Dca53530.1 |
| scaffold7170 |
Augustus |
exon |
5422 |
5805 |
. |
- |
. |
ID=Dca53530.1.exon2;Parent=Dca53530.1 |
| scaffold7170 |
Augustus |
exon |
5928 |
6101 |
. |
- |
. |
ID=Dca53530.1.exon3;Parent=Dca53530.1 |
