Carnation DB

Dca5378.1

Annotation

5-exons
f-1
sp|A5B3V0_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#ORFNames=VITISV_038754#GO:0004523;GO:0003723;GO:0003964;GO:0015074;GO:0006278#3F2P0C
Os08t0202300-03 Reverse transcriptase domain containing protein.
Repeat List (scaffold12048)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5378.1	117	708	708	30.08	592	32	2e-88
Target_name	Start	End	Length	Cov(%)
sp\|A5B3V0_VITVI	4	659	1387	47.29

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5378.1	399	606	708	9.88	208	30	4e-18
Target_name	Start	End	Length	Cov(%)
Os03t0439900-01	162	396	421	55.81

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold12048	Augustus	mRNA	1	4915	.	-	.	ID=Dca5378.1;Parent=Dca5378
scaffold12048	Augustus	exon	1	451	.	-	.	ID=Dca5378.1.exon1;Parent=Dca5378.1
scaffold12048	Augustus	exon	524	1021	.	-	.	ID=Dca5378.1.exon2;Parent=Dca5378.1
scaffold12048	Augustus	exon	3515	3902	.	-	.	ID=Dca5378.1.exon3;Parent=Dca5378.1
scaffold12048	Augustus	exon	4029	4516	.	-	.	ID=Dca5378.1.exon4;Parent=Dca5378.1
scaffold12048	Augustus	exon	4615	4915	.	-	.	ID=Dca5378.1.exon5;Parent=Dca5378.1