Carnation DB

Dca54028.1

Annotation

11-exons
f-1
sp|B9I5P3_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_571104#unknown#0F0P0C
AT3G04480.1 | Symbols: | endoribonucleases | chr3:1193988-1197320 REVERSE LENGTH=718
Repeat List (scaffold730)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca54028.1	22	727	734	55.31	706	57	0
Target_name	Start	End	Length	Cov(%)
sp\|B9I5P3_POPTR	51	741	742	93.12

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca54028.1	29	727	734	52.17	699	55	0
Target_name	Start	End	Length	Cov(%)
AT3G04480.1	36	717	718	94.98

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold730	Augus-PASA	mRNA	105514	110960	.	-	.	ID=Dca54028.1;Parent=Dca54028
scaffold730	Augus-PASA	exon	105514	105747	.	-	.	ID=Dca54028.1.exon1;Parent=Dca54028.1
scaffold730	Augus-PASA	exon	105942	106281	.	-	.	ID=Dca54028.1.exon2;Parent=Dca54028.1
scaffold730	Augus-PASA	exon	106531	106868	.	-	.	ID=Dca54028.1.exon3;Parent=Dca54028.1
scaffold730	Augus-PASA	exon	107298	107629	.	-	.	ID=Dca54028.1.exon4;Parent=Dca54028.1
scaffold730	Augus-PASA	exon	107717	108059	.	-	.	ID=Dca54028.1.exon5;Parent=Dca54028.1
scaffold730	Augus-PASA	exon	108412	108484	.	-	.	ID=Dca54028.1.exon6;Parent=Dca54028.1
scaffold730	Augus-PASA	exon	108578	108660	.	-	.	ID=Dca54028.1.exon7;Parent=Dca54028.1
scaffold730	Augus-PASA	exon	109948	109980	.	-	.	ID=Dca54028.1.exon8;Parent=Dca54028.1
scaffold730	Augustus	exon	110069	110294	.	-	.	ID=Dca54028.1.exon9;Parent=Dca54028.1
scaffold730	Augustus	exon	110648	110818	.	-	.	ID=Dca54028.1.exon10;Parent=Dca54028.1
scaffold730	Augustus	exon	110929	110960	.	-	.	ID=Dca54028.1.exon11;Parent=Dca54028.1