Carnation DB

Dca54352.1

Annotation

12-exons
f-1
sp|B9GVR6_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_646478#GO:0005488#1F0P0C
Os02t0100300-01 Similar to HSP associated protein like.
Repeat List (scaffold740)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca54352.1	1	408	500	57.8	408	69	1e-128
Target_name	Start	End	Length	Cov(%)
sp\|B9GVR6_POPTR	2	408	410	99.26

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca54352.1	1	409	500	49.8	409	59	1e-120
Target_name	Start	End	Length	Cov(%)
Os02t0100300-01	1	407	409	99.51

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold740	Augus-PASA	mRNA	19809	23980	.	+	.	ID=Dca54352.1;Parent=Dca54352
scaffold740	Augus-PASA	exon	19809	19918	.	+	.	ID=Dca54352.1.exon1;Parent=Dca54352.1
scaffold740	Augus-PASA	exon	19998	20037	.	+	.	ID=Dca54352.1.exon2;Parent=Dca54352.1
scaffold740	Augus-PASA	exon	20376	20528	.	+	.	ID=Dca54352.1.exon3;Parent=Dca54352.1
scaffold740	Augus-PASA	exon	21140	21227	.	+	.	ID=Dca54352.1.exon4;Parent=Dca54352.1
scaffold740	Augus-PASA	exon	21335	21415	.	+	.	ID=Dca54352.1.exon5;Parent=Dca54352.1
scaffold740	Augus-PASA	exon	21512	21576	.	+	.	ID=Dca54352.1.exon6;Parent=Dca54352.1
scaffold740	Augus-PASA	exon	21741	21881	.	+	.	ID=Dca54352.1.exon7;Parent=Dca54352.1
scaffold740	Augus-PASA	exon	22173	22289	.	+	.	ID=Dca54352.1.exon8;Parent=Dca54352.1
scaffold740	Augus-PASA	exon	22375	22656	.	+	.	ID=Dca54352.1.exon9;Parent=Dca54352.1
scaffold740	Augus-PASA	exon	22816	22873	.	+	.	ID=Dca54352.1.exon10;Parent=Dca54352.1
scaffold740	Augustus	exon	23096	23192	.	+	.	ID=Dca54352.1.exon11;Parent=Dca54352.1
scaffold740	Augustus	exon	23710	23980	.	+	.	ID=Dca54352.1.exon12;Parent=Dca54352.1