Dca54378.1
Annotation
- 3-exons
- f-1
- sp|Q10IE2_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os03g35560#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold7404)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca54378.1 |
3 |
128 |
262 |
32.44 |
126 |
50 |
2e-34
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q10IE2_ORYSJ |
506 |
678 |
1248 |
13.86 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca54378.1 |
3 |
130 |
262 |
19.46 |
128 |
40 |
2e-14
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
599 |
717 |
1428 |
8.33 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold7404 |
Augustus |
mRNA |
11102 |
14576 |
. |
- |
. |
ID=Dca54378.1;Parent=Dca54378 |
| scaffold7404 |
Augustus |
exon |
11102 |
11400 |
. |
- |
. |
ID=Dca54378.1.exon1;Parent=Dca54378.1 |
| scaffold7404 |
Augustus |
exon |
13871 |
14122 |
. |
- |
. |
ID=Dca54378.1.exon2;Parent=Dca54378.1 |
| scaffold7404 |
Augustus |
exon |
14339 |
14576 |
. |
- |
. |
ID=Dca54378.1.exon3;Parent=Dca54378.1 |
