Carnation DB

Dca5446.1

Annotation

9-exons
f-1
sp|B9HZK7_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_771073#unknown#0F0P0C
AT4G04885.1 | Symbols: PCFS4 | PCF11P-similar protein 4 | chr4:2472083-2475417 FORWARD LENGTH=808
Repeat List (scaffold12089)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5446.1	407	805	805	27.08	399	52	7e-102
Target_name	Start	End	Length	Cov(%)
sp\|B9HZK7_POPTR	590	995	1031	39.37

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca5446.1	586	801	805	18.38	216	69	4e-86
Target_name	Start	End	Length	Cov(%)
AT4G04885.1	579	793	808	26.6

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold12089	Augustus	mRNA	3080	14140	.	-	.	ID=Dca5446.1;Parent=Dca5446
scaffold12089	Augustus	exon	3080	3610	.	-	.	ID=Dca5446.1.exon1;Parent=Dca5446.1
scaffold12089	Augustus	exon	3712	4506	.	-	.	ID=Dca5446.1.exon2;Parent=Dca5446.1
scaffold12089	Augustus	exon	9037	9294	.	-	.	ID=Dca5446.1.exon3;Parent=Dca5446.1
scaffold12089	Augustus	exon	9418	9492	.	-	.	ID=Dca5446.1.exon4;Parent=Dca5446.1
scaffold12089	Augustus	exon	9835	9920	.	-	.	ID=Dca5446.1.exon5;Parent=Dca5446.1
scaffold12089	Augustus	exon	11189	11240	.	-	.	ID=Dca5446.1.exon6;Parent=Dca5446.1
scaffold12089	Augustus	exon	11341	11415	.	-	.	ID=Dca5446.1.exon7;Parent=Dca5446.1
scaffold12089	Augustus	exon	11490	11556	.	-	.	ID=Dca5446.1.exon8;Parent=Dca5446.1
scaffold12089	Augustus	exon	13662	14140	.	-	.	ID=Dca5446.1.exon9;Parent=Dca5446.1