Carnation DB

Dca54760.1

Annotation

7-exons
f-1
sp|B9HYN1_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_887384#GO:0005198#1F0P0C
sp|D7MET3_ARALL#Vesicle-associated membrane family protein#Arabidopsis lyrata subsp lyrata (Lyre-leaved rock-cress)#ORFNames=ARALYDRAFT_492738#GO:0005198#1F0P0C
Repeat List (scaffold7522)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca54760.1	27	239	240	72.91	213	83	1e-98
Target_name	Start	End	Length	Cov(%)
sp\|B9HYN1_POPTR	23	234	235	90.21

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca54760.1	23	239	240	68.33	217	70	7e-91
Target_name	Start	End	Length	Cov(%)
AT4G21450.3	79	313	314	74.84

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold7522	Augus-PASA	mRNA	11612	14567	.	-	.	ID=Dca54760.1;Parent=Dca54760
scaffold7522	Augus-PASA	exon	11612	11671	.	-	.	ID=Dca54760.1.exon1;Parent=Dca54760.1
scaffold7522	Augus-PASA	exon	11873	11992	.	-	.	ID=Dca54760.1.exon2;Parent=Dca54760.1
scaffold7522	Augus-PASA	exon	12149	12226	.	-	.	ID=Dca54760.1.exon3;Parent=Dca54760.1
scaffold7522	Augus-PASA	exon	12433	12554	.	-	.	ID=Dca54760.1.exon4;Parent=Dca54760.1
scaffold7522	Augus-PASA	exon	12661	12742	.	-	.	ID=Dca54760.1.exon5;Parent=Dca54760.1
scaffold7522	Augus-PASA	exon	12851	12921	.	-	.	ID=Dca54760.1.exon6;Parent=Dca54760.1
scaffold7522	Augus-PASA	exon	14378	14567	.	-	.	ID=Dca54760.1.exon7;Parent=Dca54760.1