Dca54802.1
Annotation
- 3-exons
- f-1
- sp|Q2QNX8_ORYSJ#Retrotransposon protein, putative, unclassified#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g36390#GO:0003723;GO:0003964;GO:0006278#2F1P0C
- Repeat List (scaffold754)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca54802.1 |
2 |
667 |
700 |
32.14 |
666 |
31 |
2e-89
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q2QNX8_ORYSJ |
426 |
1158 |
1188 |
61.7 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca54802.1 |
13 |
288 |
700 |
13.85 |
276 |
30 |
7e-35
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os06t0484800-00 |
492 |
808 |
857 |
36.98 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold754 |
Augustus |
mRNA |
4470 |
7931 |
. |
+ |
. |
ID=Dca54802.1;Parent=Dca54802 |
| scaffold754 |
Augustus |
exon |
4470 |
4925 |
. |
+ |
. |
ID=Dca54802.1.exon1;Parent=Dca54802.1 |
| scaffold754 |
Augustus |
exon |
5063 |
5381 |
. |
+ |
. |
ID=Dca54802.1.exon2;Parent=Dca54802.1 |
| scaffold754 |
Augustus |
exon |
6604 |
7931 |
. |
+ |
. |
ID=Dca54802.1.exon3;Parent=Dca54802.1 |
