Carnation DB

Dca55321.1

Annotation

5-exons
f-1
sp|H2KWP6_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g25734#unknown#0F0P0C
Repeat List (scaffold7696)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca55321.1	3	449	461	52.49	447	43	2e-104
Target_name	Start	End	Length	Cov(%)
sp\|H2KWP6_ORYSJ	368	931	932	60.51

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca55321.1	83	184	461	11.06	102	50	1e-23
Target_name	Start	End	Length	Cov(%)
Os11t0656500-01	904	1005	1401	7.28

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold7696	Augustus	mRNA	11242	13114	.	+	.	ID=Dca55321.1;Parent=Dca55321
scaffold7696	Augustus	exon	11242	11488	.	+	.	ID=Dca55321.1.exon1;Parent=Dca55321.1
scaffold7696	Augustus	exon	11592	11894	.	+	.	ID=Dca55321.1.exon2;Parent=Dca55321.1
scaffold7696	Augustus	exon	12001	12122	.	+	.	ID=Dca55321.1.exon3;Parent=Dca55321.1
scaffold7696	Augustus	exon	12290	12533	.	+	.	ID=Dca55321.1.exon4;Parent=Dca55321.1
scaffold7696	Augustus	exon	12645	13114	.	+	.	ID=Dca55321.1.exon5;Parent=Dca55321.1