Dca55495.1
Annotation
- 4-exons
- f-1
- sp|Q10IL4_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os03g33850#GO:0003676#1F0P0C
- Repeat List (scaffold7733)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca55495.1 |
1 |
536 |
538 |
48.51 |
536 |
48 |
1e-136
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|Q10IL4_ORYSJ |
53 |
562 |
562 |
90.74 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca55495.1 |
398 |
532 |
538 |
8.36 |
135 |
34 |
5e-11
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
1288 |
1420 |
1428 |
9.31 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold7733 |
Augustus |
mRNA |
18779 |
20736 |
. |
+ |
. |
ID=Dca55495.1;Parent=Dca55495 |
| scaffold7733 |
Augustus |
exon |
18779 |
19301 |
. |
+ |
. |
ID=Dca55495.1.exon1;Parent=Dca55495.1 |
| scaffold7733 |
Augustus |
exon |
19426 |
19945 |
. |
+ |
. |
ID=Dca55495.1.exon2;Parent=Dca55495.1 |
| scaffold7733 |
Augustus |
exon |
20077 |
20143 |
. |
+ |
. |
ID=Dca55495.1.exon3;Parent=Dca55495.1 |
| scaffold7733 |
Augustus |
exon |
20230 |
20736 |
. |
+ |
. |
ID=Dca55495.1.exon4;Parent=Dca55495.1 |
