Dca55525.1
Annotation
- 4-exons
- f-1
- sp|B9GFM5_POPTR#Predicted protein#Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp trichocarpa)#ORFNames=POPTRDRAFT_753283#unknown#0F0P0C
- AT5G55820.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Inner centromere protein, ARK-binding region (InterPro:IPR005635); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:22586287-22594035 FORWARD LENGTH=1826
- Repeat List (scaffold7744)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca55525.1 |
91 |
688 |
700 |
32.71 |
598 |
36 |
3e-58
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|B9GFM5_POPTR |
965 |
1541 |
1580 |
36.51 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca55525.1 |
259 |
681 |
700 |
25.42 |
423 |
39 |
7e-41
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT5G55820.1 |
1333 |
1755 |
1826 |
23.16 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold7744 |
Augustus |
mRNA |
10253 |
13322 |
. |
- |
. |
ID=Dca55525.1;Parent=Dca55525 |
| scaffold7744 |
Augustus |
exon |
10253 |
10486 |
. |
- |
. |
ID=Dca55525.1.exon1;Parent=Dca55525.1 |
| scaffold7744 |
Augustus |
exon |
11012 |
11206 |
. |
- |
. |
ID=Dca55525.1.exon2;Parent=Dca55525.1 |
| scaffold7744 |
Augustus |
exon |
11282 |
11625 |
. |
- |
. |
ID=Dca55525.1.exon3;Parent=Dca55525.1 |
| scaffold7744 |
Augustus |
exon |
11993 |
13322 |
. |
- |
. |
ID=Dca55525.1.exon4;Parent=Dca55525.1 |
