Carnation DB

Dca55546.1

Annotation

9-exons
f-31
sp|D7U4N2_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_03s0038g04270#unknown#0F0P0C
sp|Q6TKQ6_VITAE#Putative ankyrin-repeat protein#Vitis aestivalis (Grape)#unknown#unknown#0F0P0C
Repeat List (scaffold775)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca55546.1	51	361	361	72.85	311	83	2e-151
Target_name	Start	End	Length	Cov(%)
sp\|D7U4N2_VITVI	43	358	358	88.26

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca55546.1	34	361	361	62.88	328	70	1e-125
Target_name	Start	End	Length	Cov(%)
Os09t0513000-01	6	329	330	98.18

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold775	Augus-PASA	mRNA	82112	86325	.	+	.	ID=Dca55546.1;Parent=Dca55546
scaffold775	Augus-PASA	exon	82112	82127	.	+	.	ID=Dca55546.1.exon1;Parent=Dca55546.1
scaffold775	Augus-PASA	exon	82327	82380	.	+	.	ID=Dca55546.1.exon2;Parent=Dca55546.1
scaffold775	Augus-PASA	exon	82524	82705	.	+	.	ID=Dca55546.1.exon3;Parent=Dca55546.1
scaffold775	Augus-PASA	exon	82871	83080	.	+	.	ID=Dca55546.1.exon4;Parent=Dca55546.1
scaffold775	Augus-PASA	exon	83163	83311	.	+	.	ID=Dca55546.1.exon5;Parent=Dca55546.1
scaffold775	Augus-PASA	exon	83412	83583	.	+	.	ID=Dca55546.1.exon6;Parent=Dca55546.1
scaffold775	Augustus	exon	84952	85044	.	+	.	ID=Dca55546.1.exon7;Parent=Dca55546.1
scaffold775	Augustus	exon	86001	86140	.	+	.	ID=Dca55546.1.exon8;Parent=Dca55546.1
scaffold775	Augustus	exon	86226	86325	.	+	.	ID=Dca55546.1.exon9;Parent=Dca55546.1
scaffold775	Augustus	mRNA	82341	86325	.	+	.	ID=Dca55546.2;Parent=Dca55546
scaffold775	Augustus	exon	82341	82356	.	+	.	ID=Dca55546.2.exon1;Parent=Dca55546.2
scaffold775	Augus-PASA	exon	82524	82705	.	+	.	ID=Dca55546.2.exon2;Parent=Dca55546.2
scaffold775	Augus-PASA	exon	82871	83080	.	+	.	ID=Dca55546.2.exon3;Parent=Dca55546.2
scaffold775	Augus-PASA	exon	83163	83311	.	+	.	ID=Dca55546.2.exon4;Parent=Dca55546.2
scaffold775	Augus-PASA	exon	83412	83583	.	+	.	ID=Dca55546.2.exon5;Parent=Dca55546.2
scaffold775	Augustus	exon	84952	85044	.	+	.	ID=Dca55546.2.exon6;Parent=Dca55546.2
scaffold775	Augustus	exon	86001	86140	.	+	.	ID=Dca55546.2.exon7;Parent=Dca55546.2
scaffold775	Augustus	exon	86226	86325	.	+	.	ID=Dca55546.2.exon8;Parent=Dca55546.2