Carnation DB

Dca55564.1

Annotation

5-exons
f-1
sp|Q2QYG3_ORYSJ#Retrotransposon protein, putative, Ty1-copia subclass#Oryza sativa subsp japonica (Rice)#ORFNames=LOC_Os12g02780#unknown#0F0P0C
Repeat List (scaffold775)

Sequences

Blastp Summary

Trem (Uniprot-tremble)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca55564.1	264	477	477	25.78	214	54	3e-58
Target_name	Start	End	Length	Cov(%)
sp\|Q2QYG3_ORYSJ	64	292	389	58.86

AtOs (Arabidopsis thaliana & Oryza sativa)

Query_name	Start	End	Length	Cov(%)	Match_len	Iden(%)	p-value
Dca55564.1	271	474	477	17.61	204	32	4e-31
Target_name	Start	End	Length	Cov(%)
Os08t0125300-01	961	1224	1428	18.48

Coding region

seqname	source	feature	start	end	score	strand	frame	group
scaffold775	Augustus	mRNA	184092	186744	.	-	.	ID=Dca55564.1;Parent=Dca55564
scaffold775	Augustus	exon	184092	184420	.	-	.	ID=Dca55564.1.exon1;Parent=Dca55564.1
scaffold775	Augustus	exon	184559	184853	.	-	.	ID=Dca55564.1.exon2;Parent=Dca55564.1
scaffold775	Augustus	exon	185022	185471	.	-	.	ID=Dca55564.1.exon3;Parent=Dca55564.1
scaffold775	Augustus	exon	186247	186369	.	-	.	ID=Dca55564.1.exon4;Parent=Dca55564.1
scaffold775	Augustus	exon	186508	186744	.	-	.	ID=Dca55564.1.exon5;Parent=Dca55564.1