Dca55696.1
Annotation
- 4-exons
- f-1
- sp|O81506_ARATH#Putative retrotransposon protein#Arabidopsis thaliana (Mouse-ear cress)#Name=T7M24.7#GO:0003676;GO:0015074#1F1P0C
- Repeat List (scaffold7796)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca55696.1 |
172 |
396 |
397 |
38.03 |
225 |
58 |
6e-82
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|O81506_ARATH |
54 |
316 |
964 |
27.28 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca55696.1 |
200 |
390 |
397 |
20.9 |
191 |
44 |
7e-42
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| Os08t0125300-01 |
533 |
725 |
1428 |
13.51 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold7796 |
Augustus |
mRNA |
3249 |
9056 |
. |
+ |
. |
ID=Dca55696.1;Parent=Dca55696 |
| scaffold7796 |
Augustus |
exon |
3249 |
3506 |
. |
+ |
. |
ID=Dca55696.1.exon1;Parent=Dca55696.1 |
| scaffold7796 |
Augustus |
exon |
7848 |
8013 |
. |
+ |
. |
ID=Dca55696.1.exon2;Parent=Dca55696.1 |
| scaffold7796 |
Augustus |
exon |
8108 |
8188 |
. |
+ |
. |
ID=Dca55696.1.exon3;Parent=Dca55696.1 |
| scaffold7796 |
Augustus |
exon |
8368 |
9056 |
. |
+ |
. |
ID=Dca55696.1.exon4;Parent=Dca55696.1 |
