Dca55945.1
Annotation
- 4-exons
- f-1
- sp|B1N668_SOLLC#Copia LTR rider#Solanum lycopersicum (Tomato) (Lycopersicon esculentum)#ORFNames=LYC_68t000004, SUNLYC_67t000007#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- Repeat List (scaffold786)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca55945.1 |
430 |
619 |
623 |
10.27 |
190 |
34 |
9e-23
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|B1N668_SOLLC |
644 |
812 |
1307 |
12.93 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca55945.1 |
315 |
428 |
623 |
8.18 |
114 |
45 |
4e-22
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| ATMG00300.1 |
28 |
141 |
145 |
78.62 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold786 |
Augustus |
mRNA |
20340 |
24821 |
. |
- |
. |
ID=Dca55945.1;Parent=Dca55945 |
| scaffold786 |
Augustus |
exon |
20340 |
20923 |
. |
- |
. |
ID=Dca55945.1.exon1;Parent=Dca55945.1 |
| scaffold786 |
Augustus |
exon |
21400 |
22347 |
. |
- |
. |
ID=Dca55945.1.exon2;Parent=Dca55945.1 |
| scaffold786 |
Augustus |
exon |
22503 |
22587 |
. |
- |
. |
ID=Dca55945.1.exon3;Parent=Dca55945.1 |
| scaffold786 |
Augustus |
exon |
24567 |
24821 |
. |
- |
. |
ID=Dca55945.1.exon4;Parent=Dca55945.1 |
