Dca5599.1
Annotation
- 4-exons
- f-1
- sp|F6HG58_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#OrderedLocusNames=VIT_01s0010g02800#unknown#0F0P0C
- AT5G14230.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 2 in Arabidopsis thaliana (TAIR:AT5G57740.1); Has 66374 Blast hits to 25358 proteins in 1201 species: Archae - 121; Bacteria - 8133; Metazoa - 29530; Fungi - 5885; Plants - 3349; Viruses - 785; Other Eukaryotes - 18571 (source: NCBI BLink). | chr5:4591883-4595775 FORWARD LENGTH=751
- Repeat List (scaffold1216)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca5599.1 |
4 |
752 |
765 |
61.69 |
749 |
63 |
0
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|F6HG58_VITVI |
9 |
756 |
761 |
98.29 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca5599.1 |
23 |
753 |
765 |
54.5 |
731 |
57 |
0
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT5G14230.1 |
19 |
747 |
751 |
97.07 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold1216 |
Augustus |
mRNA |
20258 |
24377 |
. |
- |
. |
ID=Dca5599.1;Parent=Dca5599 |
| scaffold1216 |
Augustus |
exon |
20258 |
21829 |
. |
- |
. |
ID=Dca5599.1.exon1;Parent=Dca5599.1 |
| scaffold1216 |
Augustus |
exon |
22350 |
22487 |
. |
- |
. |
ID=Dca5599.1.exon2;Parent=Dca5599.1 |
| scaffold1216 |
Augustus |
exon |
22597 |
22872 |
. |
- |
. |
ID=Dca5599.1.exon3;Parent=Dca5599.1 |
| scaffold1216 |
Augustus |
exon |
24066 |
24377 |
. |
- |
. |
ID=Dca5599.1.exon4;Parent=Dca5599.1 |
