Dca56134.1
Annotation
- 2-exons
- f-1
- sp|A5B919_VITVI#Putative uncharacterized protein#Vitis vinifera (Grape)#ORFNames=VITISV_002640#GO:0003676;GO:0008270;GO:0015074#2F1P0C
- AT1G21280.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:7447690-7448403 REVERSE LENGTH=237
- Repeat List (scaffold791)
Sequences
Blastp Summary
Trem (Uniprot-tremble)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca56134.1 |
1 |
588 |
620 |
42.58 |
588 |
42 |
2e-135
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| sp|A5B919_VITVI |
1 |
637 |
1450 |
43.93 |
AtOs (Arabidopsis thaliana & Oryza sativa)
| Query_name |
Start |
End |
Length |
Cov(%) |
Match_len |
Iden(%) |
p-value |
| Dca56134.1 |
11 |
224 |
620 |
12.41 |
214 |
36 |
5e-31
|
| Target_name |
Start |
End |
Length |
Cov(%) |
| AT1G21280.1 |
13 |
229 |
237 |
91.56 |
Coding region
| seqname |
source |
feature |
start |
end |
score |
strand |
frame |
group |
| scaffold791 |
Augustus |
mRNA |
42625 |
44585 |
. |
+ |
. |
ID=Dca56134.1;Parent=Dca56134 |
| scaffold791 |
Augustus |
exon |
42625 |
43499 |
. |
+ |
. |
ID=Dca56134.1.exon1;Parent=Dca56134.1 |
| scaffold791 |
Augustus |
exon |
43598 |
44585 |
. |
+ |
. |
ID=Dca56134.1.exon2;Parent=Dca56134.1 |
